Package ‘ WGCNA ’ February 19 , 2015

February 19, 2015 Version 1.43 Date 2015-01-15 Title Weighted Correlation Network Analysis Author Peter Langfelder and Steve Horvath with contributions by Chaochao Cai, Jun Dong, Jeremy Miller, Lin Song, Andy Yip, and Bin Zhang Maintainer Peter Langfelder Depends R (>= 2.14), dynamicTreeCut (>= 1.62), fastcluster Imports stats, grDevices, utils, matrixStats (>= 0.8.1), Hmisc, impute, splines, foreach, doParallel, reshape, preprocessCore, survival, parallel, GO.db, AnnotationDbi Suggests org.Hs.eg.db, org.Mm.eg.db, infotheo, entropy, minet ZipData no License GPL (>= 2) Description Functions necessary to perform Weighted Correlation Network Analysis on highdimensional data. Includes functions for rudimentary data cleaning, construction of correlation networks, module identification, summarization, and relating of variables and modules to sample traits. Also includes a number of utility functions for data manipulation and visualization.